Launch freesurfer

lancer_freesurfer

Script helping you launching freesurfer pipeline for the lab

1. Prepare a directory with all your T1 images
2. cd into your output folder, it will be your SUBJECTS_DIR
3. Launch lancer_freesurfer specifying your input folder
4. Reply “y” to submit the jobs

Example: lancer_freesurfer -i path/to/input/directory

It’s possible to change the freesurfer version (6.0.1 is the default) lancer_freesurfer -i path/to/input/directory -v 5.3.0

Help: lancer_freesurfer -h